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SRX12975783: GSM5673216: Human_skeletal_muscle_cells_TGFB1_rep4 [small RNA-seq]; Homo sapiens; ncRNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 22.4M spots, 1.1G bases, 470.3Mb downloads

Submitted by: NCBI (GEO)
Study: TGF-ß-induced miR143/145 influences differentiation, insulin signaling and exercise response in human skeletal muscle [small RNA-seq]
show Abstracthide Abstract
Physical training improves insulin sensitivity and can prevent type 2 diabetes. However, approximately 20% of individuals lack a beneficial outcome in glycemic control. TGF-ß, identified as a possible upstream regulator involved in this low response is also a potent regulator of microRNAs (miRs). Aim of this study was to elucidate the potential impact of TGF-ß-driven miRNAs on individual exercise response. Non-targeted long and sncRNA sequencing analyses of TGF-ß1-treated human skeletal muscle cells corroborated the effects of TGF-ß1 on muscle cell differentiation and the induction of extracellular matrix components, and identified several TGF-ß1-regulated miRs. qPCR validated a potent upregulation of miR143/145 and miR181a2 by TGF-ß1 in both human myoblasts and differentiating myotubes. Human skeletal muscle biopsy donors participating in a supervised 8-week endurance training intervention (n=40) were categorized as responder based on fold change ISIMats (= +1.1) or low responder. In skeletal muscle of low responders, TGF-ß signaling and miR143/145 levels were stronger induced by training than in responders. Target-mining revealed HDACs, MYHs and insulin signaling components INSR and IRS1 as potential miR143/145 targets. All these targets were down-regulated in TGF-ß1-treated myotubes. Transfection of miR mimics in differentiated myotubes validated MYH1, MYH4, and IRS1 as miR143/145 targets. Elevated TGF-ß signaling and miR143/145 induction in skeletal muscle of low responders might obstruct improvements in insulin sensitivity by training in two ways: By negatively impacting cell fusion and myofiber functionality via miR143 suppressing its novel targets MYH1/4; by directly impairing insulin signaling via reduction of INSR by TGF-ß and fine-tuned IRS1 suppression by miR143. Overall design: Human skeletal muscle cells treated with TGF-ß1, TGF-ß1 + SB431542, or control cells. Data was analysed by small RNAseq.
Sample: Human_skeletal_muscle_cells_TGFB1_rep4 [small RNA-seq]
SAMN22895886 • SRS10915936 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: ncRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: NucleoSpin miRNA kit (Macherey-Nagel). Small RNA library preparation using NEBNext Small RNA Library Prep Set for Illumina (New England BioLabs).
Experiment attributes:
GEO Accession: GSM5673216
Links:
Runs: 2 runs, 22.4M spots, 1.1G bases, 470.3Mb
Run# of Spots# of BasesSizePublished
SRR1677680811,343,998567.2M238.6Mb2021-12-08
SRR1677680911,104,929555.2M231.7Mb2021-12-08

ID:
17659754

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